PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0370s0021.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 151aa    MW: 16666.1 Da    PI: 9.2721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0370s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.6e-161665355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr ++ +g+++AeIrd + +g  +r++lg+f +ae Aa a+++a+ +++g
  Kalax.0370s0021.1.p 16 FIGVRKRP-WGKFAAEIRDSTRDG--ARVWLGTFESAEAAAMAYDQAAFSIRG 65
                         78******.**********43354..************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6541573IPR001471AP2/ERF domain
SMARTSM003803.6E-331579IPR001471AP2/ERF domain
PfamPF008479.1E-121565IPR001471AP2/ERF domain
CDDcd000183.02E-171675No hitNo description
SuperFamilySSF541716.02E-211674IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-281674IPR001471AP2/ERF domain
PRINTSPR003671.2E-81627IPR001471AP2/ERF domain
PRINTSPR003671.2E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
SRIMEGLEKT VKKTSFIGVR KRPWGKFAAE IRDSTRDGAR VWLGTFESAE AAAMAYDQAA  60
FSIRGSAALL NFPVQAVRES LKEIIQFQSN GECSPILALK KMHMKRRRGP STKKCKDDGV  120
NSAMQEQSVV VFEDLGTDYL EQLLISSCDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-271175165ATERF1
3gcc_A1e-271175165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108096.11e-52PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_009108108.11e-52PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_013588419.11e-52PREDICTED: ethylene-responsive transcription factor 1B
RefseqXP_013746854.11e-52PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-51ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLQ8GZE91e-53Q8GZE9_SOLLC; Ethylene responsive element binding protein
STRINGBra023745.1-P3e-52(Brassica rapa)
STRINGBra023746.1-P3e-52(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-43ethylene response factor 1